Events at and by the Department of Bioinformatics - BiGCaT
This page lists events at The Department of Bioinformatics and events in which members of the BiGCaT group participate. The list is build on a case by case base and often serves as a pointer to current announcements it is not intended to be a complete list.

2008
  • August and September. Reactions to the Wikipathways paper appeared as a news feature in Nature and a research highlight in Nature Methods:
    • Big data: Wikiomics. Mitch Waldrop. Nature 455, 22-25 (2008) | doi:10.1038/455022a.
    • We the curators. Allison Doerr. Nature Methods 5, 754 - 755 (2008) doi:10.1038/nmeth0908-754a.
  • July 22. First article about WikiPathways published in PLoS Biology. Press releases were done by PLoS, UCSF and Maastricht University. The original press release was even translated in Spanish. This caused a lot of media attention, including a commentary on Naturenews and an announcement in Science. The Dutch press release resulted in a radio interview in Dutch on local L1 radio for Thomas Kelder and  a TV item on L1 television. Both the Dutch press release and the TV item were featured on many national news sites (Do a Google search in Dutch for Wikipathways to find most of these).WikiPathways is available here.
  • July 8, Andra Waagmeester's NGI supported fellowship to visit the Rebholz group at EBI featured in the NGI newsflash.
  • April 16. Thomas Kelder and Martijn van Iersel received the "Achievement in BioSciences Prize 2008" for an outstanding achievement as students in the Department  of Bioinformatics - BiGCaT. They each received £ 50 worth in OUP books.
  • April 7-9: 3rd ISAFG. International symposium on animal functional genomics. Edinburgh. Creating, sharing and using biological pathways using WikiPathways, PathVisio and GenMAPP” Thomas Kelder and Martijn van Iersel.
  • March 31 - April 2: NuGO proof of principle study meeting. Munich. Coordination of bioinformatics aspects. Chris Evelo.
  • March 9-12: Organisation of the NuGO poweruser meeting in Florence.
  • March 5-6: Biorange research meeting in Lunteren. Thomas Kelder won the application showcase there with Wikipathways.org.
  • February 27-28: NuGO carotenoids FT meeting in Newcastle. Chris Evelo presented information on differences in statistical approaches between NuGO groups, the newly developed carotenoids pathway and the usefulness of ChIP-on-CHIP analysis.
  • February 25-27: Postdoctoral course with theme on pathway analysis presented by Susan Coort in Maastricht.
  • February 18-29: Visit of Dr. Cynthia Castagini and Dr. Simona Toti to evaluate two colour microarray data from apple studies in rats.
2005
Informal Bioinformatics lunch meetings.
Starting again January 21 2005  informal bioinformatics lunch meetings will be held from 12.15 to 13.15 every 1st and 3rd Friday in every month in room k.4.140a UNS50.
The first meetings of this year will be focussed on sequence annotation. We are ultimately aiming at a better understanding of the pitfalls in microarray reporter annotation (and usage thereoff). We will start with discussing some rather broad background themes though.
  • Content of genomic databases (what can I find where)
  • Origin of genomic databases (what kind trivialities caused the problems you can encounter)
  • Background of alignment tools (why were they developed, how do they work, why doesn't a Blastx of a low quality sequence work).
  • How to use and not use alignments tools (why you should *not* look at the E-value of a Blast result)
  • Principles of datamining
Note that these themes cover most of what would be part of an introductory course on "databases and database searching". A lot of people have shown an interest in such a course and we hope that many of those will be able to attend the lunchmeetings.
Please contact Chris Evelo so we can update you on program changes, special topics and so on. Bring your own lunch.
2004

September 7th 2004
NUGO week with bioinformatics progress meeting.
 

June 1st 2004
Rosetta Resolver client installed.
 
Installation of a Rosetta Resolver client is ready. We strongly encourage everyone who wants to try doing analyses with Rosetta Resolver to contact us.

May 19th 2004
10.00-13.00 Akenzaal UNS40
With a program that consists of two short lectures about current bioinformatics research in Maastricht, a roadshow presentation of the BioAsp Bioinformatics Platform, a presentation of the local Spotfire Decissionsite and Rosetta Resolver user group plus a look into the future this roadshow was be a "must be there" event for everyone working on genomics related research in Maastricht.
Click here for the program and the presentations.

April 26th - 27th 2004
Bioinformatics kickoff meeting for NuGo.
 
At the WP7 kickoff meeting in New-Castle Chris Evelo presented some of the ongoing UM research and research plans on nutrigenomics
(see: http://www.nugo.org).

April 8th 2004
 
Chris Evelo, Lecture for the PAOG course module on Occupational Toxicology
(in Dutch: Arbeidstoxicologie) (download size about 1MB).